If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ), 'gf_id' => 'HOM05D000651', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000651' ), 'data_identifier' => 'HOM05D000651', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '874', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p11000' => 'bna', 'A03p36530' => 'bna', 'A05p38750' => 'bna', 'A06p11020' => 'bna', 'A06p21640' => 'bna', 'A09p61650' => 'bna', 'A10p18070' => 'bna', 'Aa31LG1G110' => 'aar', 'Aa31LG1G12780' => 'aar', 'Aa31LG3G3020' => 'aar', 'Aa31LG4G14130' => 'aar', 'Aa31sc23G380' => 'aar', 'Aa31sc23G390' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2267' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.159' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2257' => 'aag', 'Actinidia07177' => 'ach', 'Actinidia07178' => 'ach', 'Actinidia08056' => 'ach', 'Actinidia14976' => 'ach', 'Actinidia24138' => 'ach', 'Actinidia34802' => 'ach', 'Actinidia38872' => 'ach', 'Ah.01g003150' => 'amhyb', 'Ah.02g127800' => 'amhyb', 'Ah.03g136850' => 'amhyb', 'AL1G27060' => 'aly', 'AL3G21770' => 'aly', 'AL5G23470' => 'aly', 'AL6G34110' => 'aly', 'Aqoxy1G01134' => 'aox', 'Aqoxy1G02467' => 'aox', 'Aqoxy2G01289' => 'aox', 'Aqoxy2G01730' => 'aox', 'Aqoxy2G01731' => 'aox', 'Aqoxy3G01925' => 'aox', 'Aqoxy3G02485' => 'aox', 'Aqoxy3G02799' => 'aox', 'Aqoxy3G02802' => 'aox', 'Aqoxy4G01355' => 'aox', 'Aqoxy4G01356' => 'aox', 'Aqoxy4G01633' => 'aox', 'Aqoxy6G02076' => 'aox', 'Aqoxy6G02724' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1CZ7RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21IKS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34Z3BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58UXC0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58WDF9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6L332I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7PSI4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T6UUP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9L0M57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M9DE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E03W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC62BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCIQ1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY9A0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0QMSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ9DWZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM2IKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5WQ1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9YJLH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0DM7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH2DGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ4CW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKJD0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG90I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P862LP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH9D47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG7NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLQ3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UQR3KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZQ5G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2ZFHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAWL8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH1KLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2ISY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQQT14' => 'arhy', 'AT1G15000' => 'ath', 'AT3G10410' => 'ath', 'AT3G45010' => 'ath', 'AT5G22960' => 'ath', 'AT5G22980' => 'ath', 'ATR0723G030' => 'atr', 'ATR1153G035' => 'atr', 'Atru.chr11.927' => 'acertr', 'Atru.chr12.857' => 'acertr', 'Atru.chr2.99' => 'acertr', 'Atru.chr3.3535' => 'acertr', 'Atru.chr3.3536' => 'acertr', 'AUR62002757' => 'cqu', 'AUR62014126' => 'cqu', 'AUR62014178' => 'cqu', 'AUR62014943' => 'cqu', 'AUR62029198' => 'cqu', 'AUR62040621' => 'cqu', 'BcaB01g01129' => 'bca', 'BcaB01g04677' => 'bca', 'BcaB01g04680' => 'bca', 'BcaB01g04683' => 'bca', 'BcaB02g06564' => 'bca', 'BcaB03g16114' => 'bca', 'BcaB04g18603' => 'bca', 'BcaB04g21213' => 'bca', 'BcaB05g22672' => 'bca', 'BcaB06g26929' => 'bca', 'BcaB08g36390' => 'bca', 'BcaC01g00977' => 'bca', 'BcaC01g02003' => 'bca', 'BcaC01g04183' => 'bca', 'BcaC01g06559' => 'bca', 'BcaC03g13934' => 'bca', 'BcaC04g19615' => 'bca', 'BcaC05g25432' => 'bca', 'BcaC05g25437' => 'bca', 'BcaC05g29470' => 'bca', 'BcaC09g48099' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00210' => 'bna', 'BolC1t05403H' => 'bol', 'BolC2t07216H' => 'bol', 'BolC3t13732H' => 'bol', 'BolC3t16688H' => 'bol', 'BolC3t19222H' => 'bol', 'BolC5t30051H' => 'bol', 'BolC5t34433H' => 'bol', 'BolC8t52071H' => 'bol', 'BolC9t58238H' => 'bol', 'BraA01t04257Z' => 'bra', 'BraA02t05702Z' => 'bra', 'BraA03t10410Z' => 'bra', 'BraA03t10411Z' => 'bra', 'BraA03t10414Z' => 'bra', 'BraA03t12820Z' => 'bra', 'BraA05t22666Z' => 'bra', 'BraA06t24282Z' => 'bra', 'BraA06t25254Z' => 'bra', 'BraA09t41537Z' => 'bra', 'BraA10t43881Z' => 'bra', 'BraA10t43882Z' => 'bra', 'C02p11420' => 'bna', 'C03p12640' => 'bna', 'C03p12660' => 'bna', 'C03p44130' => 'bna', 'C03p69640' => 'bna', 'C05p13070' => 'bna', 'C05p13150' => 'bna', 'C05p57760' => 'bna', 'C08p45230' => 'bna', 'C09p53620' => 'bna', 'CAN.G1432.15' => 'can', 'CAN.G159.3' => 'can', 'CAN.G2.35' => 'can', 'CAN.G251.3' => 'can', 'CAN.G321.57' => 'can', 'CAN.G546.22' => 'can', 'CAN.G546.23' => 'can', 'CAN.G698.4' => 'can', 'CAN.G710.2' => 'can', 'CAN.G888.17' => 'can', 'CAN.G888.18' => 'can', 'CANSAT54G0204' => 'cansat', 'CANSAT56G1256' => 'cansat', 'CANSAT64G1864' => 'cansat', 'CARHR015540' => 'chi', 'CARHR084900' => 'chi', 'CARHR150960' => 'chi', 'CARHR190550' => 'chi', 'CARHR190560' => 'chi', 'Carub.0001s1477' => 'cru', 'Carub.0003s0960' => 'cru', 'Carub.0005s1080' => 'cru', 'Carub.0006s2075' => 'cru', 'Ca_01372_v3' => 'car', 'Ca_08976_v3' => 'car', 'Ca_10537_v3' => 'car', 'Ca_18735_v3' => 'car', 'Ca_18736_v3' => 'car', 'Ca_19307_v3' => 'car', 'Ca_19308_v3' => 'car', 'Ca_19309_v3' => 'car', 'Ca_26223_v3' => 'car', 'Ca_27286_v3' => 'car', 'Ca_27287_v3' => 'car', 'CBR_g1033' => 'cbr', 'Cc01_g10430' => 'ccan', 'Cc01_g10440' => 'ccan', 'Cc01_g10450' => 'ccan', 'Cc02_g10850' => 'ccan', 'Cc11_g08570' => 'ccan', 'Cc11_g08580' => 'ccan', 'Cc11_g08610' => 'ccan', 'Cc11_g08630' => 'ccan', 'Cc11_g08640' => 'ccan', 'Cc11_g08650' => 'ccan', 'CDE02G3974' => 'cde', 'CDE10G0357' => 'cde', 'CDE10G1096' => 'cde', 'Cfa001804' => 'cfa', 'Cfa008199' => 'cfa', 'Cfa008200' => 'cfa', 'Cfa008616' => 'cfa', 'Cfa010301' => 'cfa', 'Cfa015010' => 'cfa', 'Cfa021773' => 'cfa', 'Cfa025233' => 'cfa', 'Ciclev10013479m.g' => 'ccl', 'Ciclev10014786m.g' => 'ccl', 'Ciclev10015830m.g' => 'ccl', 'Ciclev10028234m.g' => 'ccl', 'Ciclev10031297m.g' => 'ccl', 'CiPaw.01G268100' => 'cil', 'CiPaw.05G189700' => 'cil', 'CiPaw.05G250300' => 'cil', 'CiPaw.06G050800' => 'cil', 'CiPaw.06G050900' => 'cil', 'CiPaw.06G051000' => 'cil', 'CiPaw.13G124500' => 'cil', 'ClCG03G002790' => 'cla', 'ClCG07G006600' => 'cla', 'ClCG08G007760' => 'cla', 'COL.COLO4_11114' => 'col', 'COL.COLO4_13097' => 'col', 'COL.COLO4_20490' => 'col', 'COL.COLO4_20494' => 'col', 'COL.COLO4_31986' => 'col', 'COL.COLO4_36175' => 'col', 'COL.COLO4_36176' => 'col', 'Cpa.g.sc1.16' => 'cpa', 'Cpa.g.sc53.140' => 'cpa', 'Cpa.g.sc65.145' => 'cpa', 'Cre01.g011300' => 'cre', 'Cre01.g037000' => 'cre', 'Cre02.g116500' => 'cre', 'Cre06.g279400' => 'cre', 'CsaV3_1G013570' => 'csa', 'CsaV3_2G020870' => 'csa', 'CsaV3_2G021150' => 'csa', 'CsaV3_5G013850' => 'csa', 'CSS0002849' => 'camsi', 'CSS0003298' => 'camsi', 'CSS0006467' => 'camsi', 'CSS0009730' => 'camsi', 'CSS0015260' => 'camsi', 'CSS0017654' => 'camsi', 'CSS0020544' => 'camsi', 'CSS0022216' => 'camsi', 'CSS0023506' => 'camsi', 'CSS0024016' => 'camsi', 'CSS0027141' => 'camsi', 'CSS0027925' => 'camsi', 'CSS0028190' => 'camsi', 'CSS0030125' => 'camsi', 'CSS0033557' => 'camsi', 'CSS0035554' => 'camsi', 'CSS0039491' => 'camsi', 'CSS0040104' => 'camsi', 'CSS0040679' => 'camsi', 'CSS0042175' => 'camsi', 'CSS0042277' => 'camsi', 'CSS0044394' => 'camsi', 'DCAR_006112' => 'dca', 'DCAR_006406' => 'dca', 'DCAR_006411' => 'dca', 'DCAR_016156' => 'dca', 'DCAR_018776' => 'dca', 'DCAR_030221' => 'dca', 'DCAR_030222' => 'dca', 'Dinv07651' => 'din', 'Dinv07652' => 'din', 'Dinv07655' => 'din', 'Dinv14428' => 'din', 'Dinv24540' => 'din', 'Dinv29365' => 'din', 'Dinv31239' => 'din', 'Dinv34731' => 'din', 'Dinv36388' => 'din', 'Duzib106G0396' => 'dzi', 'Duzib114G0434' => 'dzi', 'Duzib128G1575' => 'dzi', 'Duzib168G2112' => 'dzi', 'Duzib170G0583' => 'dzi', 'Duzib248G1110' => 'dzi', 'Duzib251G0557' => 'dzi', 'Duzib251G0891' => 'dzi', 'ECA232G1050' => 'eca', 'ECA232G3057' => 'eca', 'ECA233G2960' => 'eca', 'ECA238G0270' => 'eca', 'ECA238G4584' => 'eca', 'ECA238G4682' => 'eca', 'ECA240G4370' => 'eca', 'ECA246G2591' => 'eca', 'ECA246G3348' => 'eca', 'EL10Ac6g14044' => 'bvu', 'EL10Ac6g14135' => 'bvu', 'EL10Ac8g19695' => 'bvu', 'EL10Ac9g22595' => 'bvu', 'Eucgr.G02184' => 'egr', 'Eucgr.G02873' => 'egr', 'Eucgr.J00369' => 'egr', 'Eucgr.J00371' => 'egr', 'Eucgr.J00372' => 'egr', 'Eucgr.J00374' => 'egr', 'Eucgr.J00375' => 'egr', 'Eucgr.J00381' => 'egr', 'Eucgr.J02425' => 'egr', 'FAN01G1722' => 'fan', 'FAN03G1696' => 'fan', 'FAN06G1796' => 'fan', 'FAN06G3799' => 'fan', 'FAN07G1626' => 'fan', 'FAN07G2206' => 'fan', 'FAN10G0458' => 'fan', 'FAN10G1324' => 'fan', 'FAN12G2732' => 'fan', 'FAN12G3244' => 'fan', 'FAN14G1905' => 'fan', 'FAN15G1088' => 'fan', 'FAN15G1327' => 'fan', 'FAN16G3004' => 'fan', 'FAN16G3381' => 'fan', 'FAN17G0487' => 'fan', 'FAN17G1132' => 'fan', 'FAN20G1339' => 'fan', 'FAN20G3070' => 'fan', 'FAN21G0133' => 'fan', 'FAN21G3149' => 'fan', 'FAN24G0006' => 'fan', 'FAN24G2760' => 'fan', 'FAN25G3224' => 'fan', 'FAN27G2090' => 'fan', 'FvH4_2g21150' => 'fve', 'FvH4_2g21240' => 'fve', 'FvH4_2g40053' => 'fve', 'FvH4_3g30900' => 'fve', 'FvH4_3g30901' => 'fve', 'FvH4_4g32480' => 'fve', 'FvH4_4g32490' => 'fve', 'FvH4_4g32502' => 'fve', 'FvH4_5g04771' => 'fve', 'FvH4_7g18691' => 'fve', 'Glyma.07G218400' => 'gma', 'Glyma.07G218500' => 'gma', 'Glyma.09G049500' => 'gma', 'Glyma.09G108100' => 'gma', 'Glyma.10G104300' => 'gma', 'Glyma.10G207300' => 'gma', 'Glyma.11G193800' => 'gma', 'Glyma.11G193900' => 'gma', 'Glyma.12G177900' => 'gma', 'Glyma.13G108900' => 'gma', 'Glyma.13G322600' => 'gma', 'Glyma.15G156200' => 'gma', 'Glyma.20G014900' => 'gma', 'Glyma.20G015100' => 'gma', 'Glyma.20G015400' => 'gma', 'Glyma.20G015600' => 'gma', 'Glyma.20G016750' => 'gma', 'Glyma.20G016800' => 'gma', 'Gohir.A03G029900' => 'ghi', 'Gohir.A03G120900' => 'ghi', 'Gohir.A04G141600' => 'ghi', 'Gohir.A04G142000' => 'ghi', 'Gohir.A05G293600' => 'ghi', 'Gohir.A05G410300' => 'ghi', 'Gohir.A05G411000' => 'ghi', 'Gohir.A08G200400' => 'ghi', 'Gohir.D02G144200' => 'ghi', 'Gohir.D03G138600' => 'ghi', 'Gohir.D04G005000' => 'ghi', 'Gohir.D04G187300' => 'ghi', 'Gohir.D05G294300' => 'ghi', 'Gohir.D08G217600' => 'ghi', 'Gorai.003G145400' => 'gra', 'Gorai.004G231300' => 'gra', 'Gorai.005G161500' => 'gra', 'Gorai.009G310800' => 'gra', 'Gorai.012G006300' => 'gra', 'Gorai.012G181100' => 'gra', 'Gorai.012G181600' => 'gra', 'GSVIVG01011751001' => 'vvi', 'GSVIVG01016187001' => 'vvi', 'GSVIVG01016189001' => 'vvi', 'GSVIVG01022883001' => 'vvi', 'GSVIVG01031488001' => 'vvi', 'GSVIVG01031490001' => 'vvi', 'HanXRQChr02g0035871' => 'han', 'HanXRQChr02g0055621' => 'han', 'HanXRQChr05g0161301' => 'han', 'HanXRQChr06g0173711' => 'han', 'HanXRQChr08g0207971' => 'han', 'HanXRQChr09g0259391' => 'han', 'HanXRQChr10g0291581' => 'han', 'HanXRQChr10g0313281' => 'han', 'HanXRQChr11g0332531' => 'han', 'HanXRQChr12g0376901' => 'han', 'HanXRQChr14g0452541' => 'han', 'HanXRQChr14g0455731' => 'han', 'HanXRQChr15g0476831' => 'han', 'Haze_02810' => 'cav', 'Haze_10678' => 'cav', 'Haze_10895' => 'cav', 'Haze_10996' => 'cav', 'Haze_16744' => 'cav', 'Haze_20473' => 'cav', 'Haze_23727' => 'cav', 'Haze_24963' => 'cav', 'Hma1.2p1_0051F.1_g029320' => 'hma', 'Hma1.2p1_0145F.1_g065290' => 'hma', 'Hma1.2p1_0838F.1_g226280' => 'hma', 'Hma1.2p1_3691F.1_g337260' => 'hma', 'HPP92_008503' => 'vpl', 'Hund08366' => 'sun', 'Lalb_Chr01g0004531' => 'lal', 'Lalb_Chr01g0004541' => 'lal', 'Lalb_Chr02g0152051' => 'lal', 'Lalb_Chr03g0036241' => 'lal', 'Lalb_Chr05g0219521' => 'lal', 'Lalb_Chr05g0219531' => 'lal', 'Lalb_Chr14g0374451' => 'lal', 'Lalb_Chr14g0374461' => 'lal', 'Lalb_Chr19g0136971' => 'lal', 'Lalb_Chr19g0136981' => 'lal', 'Lalb_Chr19g0136991' => 'lal', 'Lalb_Chr22g0359861' => 'lal', 'Lalb_Chr24g0394871' => 'lal', 'Lalb_Chr24g0402561' => 'lal', 'Lalb_Chr24g0402571' => 'lal', 'Lj1A210T36' => 'lonja', 'Lj1C210G5' => 'lonja', 'Lj2C1012T3' => 'lonja', 'Lj2C21T6' => 'lonja', 'Lj3C872T1' => 'lonja', 'Lj3g0004933' => 'lja', 'Lj3g0009742' => 'lja', 'Lj3g0014728' => 'lja', 'Lj3g0020041' => 'lja', 'Lj4g0023305' => 'lja', 'Lj4g0025550' => 'lja', 'Lj5g0004289' => 'lja', 'Lj5g0009503' => 'lja', 'Lsat_1_v5_gn_0_32500' => 'lsa', 'Lsat_1_v5_gn_2_102320' => 'lsa', 'Lsat_1_v5_gn_2_113081' => 'lsa', 'Lsat_1_v5_gn_2_96681' => 'lsa', 'Lsat_1_v5_gn_2_99360' => 'lsa', 'Lsat_1_v5_gn_3_55001' => 'lsa', 'Lsat_1_v5_gn_3_55021' => 'lsa', 'Lsat_1_v5_gn_3_55241' => 'lsa', 'Lsat_1_v5_gn_3_55361' => 'lsa', 'Lsat_1_v5_gn_3_90641' => 'lsa', 'Lsat_1_v5_gn_5_149981' => 'lsa', 'Lsat_1_v5_gn_6_44121' => 'lsa', 'Lsat_1_v5_gn_9_70180' => 'lsa', 'Lsat_1_v5_gn_9_70241' => 'lsa', 'Manes.03G131725' => 'mes', 'Manes.03G140233' => 'mes', 'Manes.04G014300' => 'mes', 'Manes.07G133132' => 'mes', 'Manes.10G050700' => 'mes', 'Manes.11G151300' => 'mes', 'Manes.15G128000' => 'mes', 'Manes.17G077400' => 'mes', 'Manes.17G077700' => 'mes', 'Manes.17G077833' => 'mes', 'Mapoly0021s0045' => 'mpo', 'Mapoly0055s0016' => 'mpo', 'Mapoly0170s0029' => 'mpo', 'MBI05_g10859_MAGBIO' => 'mbi', 'MBI10_g02382_MAGBIO' => 'mbi', 'MBI10_g02383_MAGBIO' => 'mbi', 'MBI10_g02385_MAGBIO' => 'mbi', 'MBI10_g02386_MAGBIO' => 'mbi', 'MBI18_g42729_MAGBIO' => 'mbi', 'MBI18_g48058_MAGBIO' => 'mbi', 'MCO11G482' => 'mco', 'MD00G1032400' => 'mdo', 'MD01G1102600' => 'mdo', 'MD07G1169500' => 'mdo', 'MD11G1146500' => 'mdo', 'MD13G1024700' => 'mdo', 'MD13G1025000' => 'mdo', 'MD16G1027500' => 'mdo', 'Medtr1g048840' => 'mtr', 'Medtr1g050545' => 'mtr', 'Medtr1g094155' => 'mtr', 'Medtr2g095710' => 'mtr', 'Medtr2g095730' => 'mtr', 'Medtr2g095750' => 'mtr', 'Medtr4g019680' => 'mtr', 'Medtr4g057570' => 'mtr', 'Medtr4g057585' => 'mtr', 'Medtr4g057595' => 'mtr', 'Medtr4g057600' => 'mtr', 'Medtr4g084700' => 'mtr', 'Medtr4g084710' => 'mtr', 'Medtr5g097180' => 'mtr', 'Medtr7g106530' => 'mtr', 'MELO3C004946.2' => 'cme', 'MELO3C018309.2' => 'cme', 'MELO3C019830.2' => 'cme', 'Migut.D02283' => 'egut', 'Migut.D02284' => 'egut', 'Migut.E00431' => 'egut', 'Migut.F01951' => 'egut', 'Migut.G00087' => 'egut', 'Migut.L00358' => 'egut', 'Migut.N02566' => 'egut', 'MSTRG.12338' => 'ama', 'MSTRG.18694' => 'ama', 'MSTRG.21093' => 'ama', 'Nitab4.5_0000329g0240' => 'nta', 'Nitab4.5_0000426g0240' => 'nta', 'Nitab4.5_0000567g0070' => 'nta', 'Nitab4.5_0000742g0200' => 'nta', 'Nitab4.5_0000742g0210' => 'nta', 'Nitab4.5_0000870g0050' => 'nta', 'Nitab4.5_0000926g0060' => 'nta', 'Nitab4.5_0001163g0100' => 'nta', 'Nitab4.5_0001450g0220' => 'nta', 'Nitab4.5_0002001g0010' => 'nta', 'Nitab4.5_0004230g0020' => 'nta', 'Nitab4.5_0005092g0020' => 'nta', 'Nitab4.5_0006187g0030' => 'nta', 'Nitab4.5_0006187g0040' => 'nta', 'Nitab4.5_0007359g0040' => 'nta', 'Nitab4.5_0007504g0010' => 'nta', 'Nitab4.5_0007504g0020' => 'nta', 'Nitab4.5_0007504g0040' => 'nta', 'Nn1g07930' => 'nnu', 'Nn1g08502' => 'nnu', 'Nn2g13816' => 'nnu', 'Nn3g18232' => 'nnu', 'Nn4g24169' => 'nnu', 'Nn6g33520' => 'nnu', 'Nn6g35261' => 'nnu', 'Oeu000590.1' => 'oeu', 'Oeu000591.1' => 'oeu', 'Oeu000592.1' => 'oeu', 'Oeu000593.1' => 'oeu', 'Oeu000594.1' => 'oeu', 'Oeu003381.1' => 'oeu', 'Oeu007316.1' => 'oeu', 'Oeu013540.1' => 'oeu', 'Oeu013847.1' => 'oeu', 'Oeu014015.1' => 'oeu', 'Oeu018363.1' => 'oeu', 'Oeu019966.1' => 'oeu', 'Oeu022294.1' => 'oeu', 'Oeu027952.2' => 'oeu', 'Oeu029889.1' => 'oeu', 'Oeu032024.1' => 'oeu', 'Oeu033871.1' => 'oeu', 'Oeu037540.1' => 'oeu', 'Oeu042607.1' => 'oeu', 'Oeu055065.1' => 'oeu', 'Os01g0215100' => 'osa', 'Os01g0629600' => 'osa', 'Os02g0114200' => 'osa', 'Os05g0582500' => 'osa', 'Os05g0582600' => 'osa', 'Os05g0582800' => 'osa', 'Os06g0561100' => 'osa', 'Peaxi162Scf00026g00245' => 'pax', 'Peaxi162Scf00047g00334' => 'pax', 'Peaxi162Scf00114g01016' => 'pax', 'Peaxi162Scf00120g00210' => 'pax', 'Peaxi162Scf00145g01112' => 'pax', 'Peaxi162Scf00159g00083' => 'pax', 'Peaxi162Scf00159g00084' => 'pax', 'Peaxi162Scf00159g00827' => 'pax', 'Peaxi162Scf00160g00713' => 'pax', 'Peaxi162Scf00253g01127' => 'pax', 'Peaxi162Scf00372g01015' => 'pax', 'Peaxi162Scf00892g00114' => 'pax', 'PGR042G3954' => 'pgr', 'PGR119G0102' => 'pgr', 'PGR119G0523' => 'pgr', 'PGR119G2158' => 'pgr', 'PGR119G2507' => 'pgr', 'PGR142G2749' => 'pgr', 'PGSC0003DMG400000448' => 'stu', 'PGSC0003DMG400001753' => 'stu', 'PGSC0003DMG400007137' => 'stu', 'PGSC0003DMG400013995' => 'stu', 'PGSC0003DMG400016347' => 'stu', 'PGSC0003DMG400020761' => 'stu', 'PGSC0003DMG400022611' => 'stu', 'PGSC0003DMG400031068' => 'stu', 'PGSC0003DMG401006007' => 'stu', 'PGSC0003DMG402005954' => 'stu', 'PGSC0003DMG402006007' => 'stu', 'Phvul.002G094600' => 'pvu', 'Phvul.002G094800' => 'pvu', 'Phvul.002G094900' => 'pvu', 'Phvul.005G131000' => 'pvu', 'Phvul.007G099400' => 'pvu', 'Phvul.007G245800' => 'pvu', 'Phvul.009G243900' => 'pvu', 'Phvul.011G075351' => 'pvu', 'Phvul.011G084700' => 'pvu', 'Phvul.011G084900' => 'pvu', 'Phvul.011G085000' => 'pvu', 'Phvul.L001782' => 'pvu', 'Potri.004G215400' => 'ptr', 'Potri.005G060100' => 'ptr', 'Potri.008G034800' => 'ptr', 'Potri.008G129800' => 'ptr', 'Potri.008G129850' => 'ptr', 'Potri.009G006701' => 'ptr', 'Potri.010G227700' => 'ptr', 'Pp3c10_8860' => 'ppa', 'Pp3c11_6670' => 'ppa', 'Pp3c17_9890' => 'ppa', 'Pp3c1_24280' => 'ppa', 'Pp3c26_1570' => 'ppa', 'Pp3c6_20630' => 'ppa', 'PRCOL_00002527' => 'pco', 'PRCOL_00004992' => 'pco', 'PRCOL_00006933' => 'pco', 'Prupe.1G099300' => 'ppe', 'Prupe.1G325200' => 'ppe', 'Prupe.1G544600' => 'ppe', 'Prupe.2G208200' => 'ppe', 'Prupe.6G109600' => 'ppe', 'Psat0s2446g0040' => 'psa', 'Psat0s3815g0040' => 'psa', 'Psat0s3815g0080' => 'psa', 'Psat1g019760' => 'psa', 'Psat2g004720' => 'psa', 'Psat2g088800' => 'psa', 'Psat5g281160' => 'psa', 'Psat5g281240' => 'psa', 'Psat6g092800' => 'psa', 'Psat6g181160' => 'psa', 'Psat7g128480' => 'psa', 'Psat7g128680' => 'psa', 'Psat7g130160' => 'psa', 'Psat7g149240' => 'psa', 'Psat7g191920' => 'psa', 'Psat7g196040' => 'psa', 'PSO017G0211' => 'pso', 'PSO063G6249' => 'pso', 'PSO339G0356' => 'pso', 'PSO339G1454' => 'pso', 'PSO339G2798' => 'pso', 'PSO447G0139' => 'pso', 'PSO478G1519' => 'pso', 'PSO801G0370' => 'pso', 'PSO801G0506' => 'pso', 'QL01p001588' => 'qlo', 'QL01p001612' => 'qlo', 'QL01p015412' => 'qlo', 'QL01p015467' => 'qlo', 'QL01p015492' => 'qlo', 'QL01p015512' => 'qlo', 'QL01p015521' => 'qlo', 'QL01p015524' => 'qlo', 'QL03p035375' => 'qlo', 'QL03p035397' => 'qlo', 'QL08p054184' => 'qlo', 'RcHm_v2.0_Chr1g0362451' => 'rch', 'RcHm_v2.0_Chr1g0362481' => 'rch', 'RcHm_v2.0_Chr4g0441341' => 'rch', 'RcHm_v2.0_Chr4g0441351' => 'rch', 'RcHm_v2.0_Chr4g0441381' => 'rch', 'RcHm_v2.0_Chr5g0057441' => 'rch', 'RcHm_v2.0_Chr6g0287751' => 'rch', 'RcHm_v2.0_Chr6g0287771' => 'rch', 'RcHm_v2.0_Chr6g0287781' => 'rch', 'RcHm_v2.0_Chr6g0287801' => 'rch', 'Rhsim09G0066300' => 'rsi', 'Rhsim09G0066700' => 'rsi', 'Rhsim09G0097300' => 'rsi', 'Rhsim09G0147200' => 'rsi', 'Rhsim13G0099700' => 'rsi', 'Rhsim13G0099800' => 'rsi', 'Sabra04G0146400' => 'sbr', 'Sabra05G0050800' => 'sbr', 'Sabra08G0023200' => 'sbr', 'Sabra08G0098400' => 'sbr', 'Sabra10G0175600' => 'sbr', 'SalBow2G1618' => 'sbo', 'SalBow3G2342' => 'sbo', 'SalBow3G4355' => 'sbo', 'SalBow4G1644' => 'sbo', 'SalBow5G3405' => 'sbo', 'SalBow8G0771' => 'sbo', 'SalBow8G2659' => 'sbo', 'Sc04g0005050' => 'sci', 'Sc04g0005380' => 'sci', 'Sc04g0005440' => 'sci', 'Sc06g0002070' => 'sci', 'Sc21g0004190' => 'sci', 'Sed0006683' => 'sed', 'Sed0013730' => 'sed', 'Sed0014081' => 'sed', 'Sed0020091' => 'sed', 'SEGI_03552' => 'sgi', 'SEGI_12485' => 'sgi', 'SEGI_16469' => 'sgi', 'SEGI_21648' => 'sgi', 'SEGI_25279' => 'sgi', 'SEGI_32141' => 'sgi', 'SGA_v2.0_scaffold119G32660' => 'sas', 'SGA_v2.0_scaffold263G45961' => 'sas', 'SGA_v2.0_scaffold263G45963' => 'sas', 'SGA_v2.0_scaffold27G11554' => 'sas', 'SGA_v2.0_scaffold39G15180' => 'sas', 'SGA_v2.0_scaffold62G21380' => 'sas', 'SGA_v2.0_scaffold67G22578' => 'sas', 'SHI06262' => 'shi', 'SHI19890' => 'shi', 'SMO167G0024' => 'smo', 'SMO347G0171' => 'smo', 'SMO347G0386' => 'smo', 'SMO367G1073' => 'smo', 'Solyc02g033030.3' => 'sly', 'Solyc04g007720.3' => 'sly', 'Solyc05g006450.3' => 'sly', 'Solyc05g026250.3' => 'sly', 'Solyc05g026260.1' => 'sly', 'Solyc05g041540.4' => 'sly', 'Solyc06g017860.3' => 'sly', 'Solyc06g074850.3' => 'sly', 'Solyc09g007640.4' => 'sly', 'Solyc10g075173.1' => 'sly', 'Solyc10g150139.1' => 'sly', 'Solyc11g008280.3' => 'sly', 'Solyc11g013580.1' => 'sly', 'Solyc11g013590.1' => 'sly', 'Solyc11g013600.2' => 'sly', 'Solyc11g013630.1' => 'sly', 'Solyc11g013670.1' => 'sly', 'Solyc11g013680.1' => 'sly', 'Solyc11g013710.1' => 'sly', 'Solyc11g013720.1' => 'sly', 'Solyc11g066250.2' => 'sly', 'Sopen04g002810' => 'spe', 'Sopen05g002380' => 'spe', 'Sopen05g022500' => 'spe', 'Sopen05g022510' => 'spe', 'Sopen05g025600' => 'spe', 'Sopen06g007590' => 'spe', 'Sopen06g031280' => 'spe', 'Sopen09g002510' => 'spe', 'Sopen10g027670' => 'spe', 'Sopen10g027700' => 'spe', 'Sopen10g027720' => 'spe', 'Sopen11g004090' => 'spe', 'Sopen11g008610' => 'spe', 'Sopen11g008640' => 'spe', 'Sopen11g008650' => 'spe', 'Sopen11g025980' => 'spe', 'Sp1g13390' => 'spa', 'Sp3g08690' => 'spa', 'Sp5g16250' => 'spa', 'Sp6g22420' => 'spa', 'Sp6g22430' => 'spa', 'TAR374G0094' => 'tar', 'TAR383G0886' => 'tar', 'TAR622G0208' => 'tar', 'TAR623G0089' => 'tar', 'TAR633G2081' => 'tar', 'THA.LOC104810875' => 'tha', 'THA.LOC104814819' => 'tha', 'THA.LOC104816426' => 'tha', 'THA.LOC104824145' => 'tha', 'Thecc.01G223000' => 'tca', 'Thecc.02G282200' => 'tca', 'Thecc.02G282500' => 'tca', 'Thecc.02G287700' => 'tca', 'Thecc.09G349600' => 'tca', 'Thecc.10G085200' => 'tca', 'Thecc.10G085500' => 'tca', 'Thhalv10002473m.g' => 'esa', 'Thhalv10007602m.g' => 'esa', 'Thhalv10013297m.g' => 'esa', 'Thhalv10013304m.g' => 'esa', 'Thhalv10015901m.g' => 'esa', 'Thhalv10020509m.g' => 'esa', 'TPR.G11517' => 'tpr', 'TPR.G11572' => 'tpr', 'TPR.G11578' => 'tpr', 'TPR.G11597' => 'tpr', 'TPR.G1323' => 'tpr', 'TPR.G19120' => 'tpr', 'TPR.G19124' => 'tpr', 'TPR.G19130' => 'tpr', 'TPR.G22705' => 'tpr', 'TPR.G29102' => 'tpr', 'TPR.G31286' => 'tpr', 'TPR.G32483' => 'tpr', 'TPR.G32510' => 'tpr', 'TPR.G38350' => 'tpr', 'TPR.G6129' => 'tpr', 'TPR.G6166' => 'tpr', 'TPR.G7273' => 'tpr', 'TWI09G0207' => 'twi', 'TWI09G0551' => 'twi', 'TWI09G1344' => 'twi', 'TWI09G1415' => 'twi', 'TWI12G0668' => 'twi', 'TWI12G0735' => 'twi', 'TWI12G1134' => 'twi', 'TWI12G1204' => 'twi', 'TWI15G0588' => 'twi', 'TWI15G1057' => 'twi', 'TWI18G0427' => 'twi', 'TWI18G1107' => 'twi', 'TWI23G0108' => 'twi', 'TWI31G1292' => 'twi', 'TWI32G0908' => 'twi', 'TWI38G0661' => 'twi', 'TWI38G2062' => 'twi', 'TWI38G2104' => 'twi', 'TWI56G0682' => 'twi', 'TWI60G0247' => 'twi', 'TWI63G1539' => 'twi', 'TWI73G0148' => 'twi', 'TWI73G0874' => 'twi', 'TWI74G0918' => 'twi', 'TWI75G0978' => 'twi', 'TWI77G0846' => 'twi', 'TWI79G0367' => 'twi', 'TWI79G0768' => 'twi', 'TWI79G0957' => 'twi', 'TWI79G1053' => 'twi', 'TWI79G1058' => 'twi', 'TWI79G1105' => 'twi', 'TWI79G1385' => 'twi', 'TWI79G1566' => 'twi', 'TWI79G1785' => 'twi', 'TWI81G0382' => 'twi', 'TWI81G0412' => 'twi', 'TWI81G0720' => 'twi', 'TWI81G0811' => 'twi', 'TWI81G0840' => 'twi', 'unitig_0.g2324' => 'ugi', 'unitig_46.g18606' => 'ugi', 'unitig_746.g26623' => 'ugi', 'unitig_748.g8704' => 'ugi', 'unitig_749.g13365' => 'ugi', 'vmacro00148' => 'vma', 'vmacro00416' => 'vma', 'vmacro03262' => 'vma', 'vmacro03263' => 'vma', 'vmacro04832' => 'vma', 'vmacro07019' => 'vma', 'vmacro10249' => 'vma', 'VMungo0251G0324' => 'vmu', 'VMungo0251G2005' => 'vmu', 'VMungo0251G2258' => 'vmu', 'VMungo0720G1027' => 'vmu', 'VMungo0720G2831' => 'vmu', 'VMungo1080G0653' => 'vmu', 'VMungo1127G0901' => 'vmu', 'VMungo1127G1021' => 'vmu', 'VMungo1127G1941' => 'vmu', 'VMungo1215G3036' => 'vmu', 'VMungo1309G0284' => 'vmu', 'Zm00001eb005150' => 'zma', 'Zm00001eb005160' => 'zma', 'Zm00001eb075100' => 'zma', 'Zm00001eb115820' => 'zma', 'Zm00001eb165430' => 'zma', 'Zm00001eb176640' => 'zma', 'Zm00001eb229790' => 'zma', 'Zm00001eb297170' => 'zma', 'Zm00001eb321330' => 'zma', 'Zm00001eb358880' => 'zma', 'Zm00001eb427820' => 'zma' ) $gf_id = 'HOM05D000651' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000651' ) $data_identifier = 'HOM05D000651' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 14, 'arhy' => (int) 35, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 11, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 3, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 22, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 25, 'fve' => (int) 10, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 15, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 20, 'osa' => (int) 7, 'pax' => (int) 12, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 16, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 16, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 40, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 11, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1